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1

PhenoMiner: from text to a database of phenotypes associated with OMIM diseases

Collier, Nigel, Groza, Tudor, Smedley, Damian, Robinson, Peter N., Oellrich, Anika, Rebholz-Schuhmann, Dietrich

Journal:

Year:

2015

Language:

english

File:

PDF, 1.36 MB

english, 2015

2

Uncovering text mining: A survey of current work on web-based epidemic intelligence

Journal:

Global Public Health

Year:

2012

Language:

english

File:

PDF, 264 KB

english, 2012

3

Structuring an event ontology for disease outbreak detection

Ai Kawazoe, Hutchatai Chanlekha, Mika Shigematsu, Nigel Collier

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 388 KB

english, 2008

4

Classifying disease outbreak reports using n-grams and semantic features

Mike Conway, Son Doan, Ai Kawazoe, Nigel Collier

Journal:

International Journal of Medical Informatics

Year:

2009

Language:

english

File:

PDF, 1.71 MB

english, 2009

5

[ACM Press the 22nd ACM international conference - San Francisco, California, USA (2013.10.27-2013.11.01)] Proceedings of the 22nd ACM international conference on Conference on information & knowledge management - CIKM '13 - A partially supervised cross-collection topic model for cross-domain text classification

Bao, Yang, Collier, Nigel, Datta, Anindya

Year:

2013

Language:

english

File:

PDF, 454 KB

english, 2013

6

Automatic acquisition and classification of terminology using a tagged corpus in the molecular biology domain

Collier, Nigel, Nobata, Chikashi, Tsujii, Junichi

Journal:

Year:

2001

Language:

english

File:

PDF, 109 KB

english, 2001

7

[IEEE 2017 9th International Conference on Knowledge and Systems Engineering (KSE) - Hue (2017.10.19-2017.10.21)] 2017 9th International Conference on Knowledge and Systems Engineering (KSE) - Improving chemical-induced disease relation extraction with learned features based on convolutional neural network

Le, Hoang-Quynh, Can, Duy-Cat, Dang, Thanh Hai, Tran, Mai-Vu, Ha, Quang-Thuy, Collier, Nigel

Year:

2017

Language:

english

File:

PDF, 394 KB

english, 2017

8

A pragmatic guide to geoparsing evaluation

Gritta, Milan, Pilehvar, Mohammad Taher, Collier, Nigel

Journal:

Language Resources and Evaluation

Year:

2019

Language:

english

File:

PDF, 1.37 MB

english, 2019

9

Combined Point-of-Care Nucleic Acid and Antibody Testing for SARS-CoV-2 following Emergence of D614G Spike Variant

Mlcochova, Petra, Collier, Dami, Ritchie, Allyson, Assennato, Sonny M., Hosmillo, Myra, Goel, Neha, Meng, Bo, Chatterjee, Krishna, Mendoza, Vivien, Temperton, Nigel, Kiss, Leo, James, Leo C., Ciazynsk

Journal:

Cell Reports Medicine

Year:

2020

File:

PDF, 2.48 MB

2020

10

Epithelialization of hydrogels achieved by amine functionalization and co-culture with stromal cells

Stephen Rimmer, Claire Johnson, Bojun Zhao, Joyleen Collier, Louisa Gilmore, Subodh Sabnis, Paul Wyman, Christopher Sammon, Nigel J. Fullwood, Sheila MacNeil

Journal:

Year:

2007

Language:

english

File:

PDF, 1.04 MB

english, 2007

11

Towards classifying species in systems biology papers using text mining

Qi Wei, Nigel Collier

Journal:

BMC Research Notes

Year:

2011

Language:

english

File:

PDF, 415 KB

english, 2011

12

A multilingual ontology for infectious disease surveillance: rationale, design and challenges

Nigel Collier, Ai Kawazoe, Lihua Jin, Mika Shigematsu, Dinh Dien, Roberto A. Barrero, Koichi Takeuchi, Asanee Kawtrakul

Journal:

Language Resources and Evaluation

Year:

2006

Language:

english

File:

PDF, 255 KB

english, 2006

13

A Framework for Cross-Language Information Access: Application to English and Japanese

Gareth Jones, Nigel Collier, Tetsuya Sakai, Kazuo Sumita, Hideki Hirakawa

Journal:

Language Resources and Evaluation

Year:

2001

Language:

english

File:

PDF, 163 KB

english, 2001

14

Contaminants of food

Steven J. Wearne, Martin G. de M. Gem, Nigel Harrison, Peter P. Collier, Frank Fairweather, Michael Fielding, Andrew Franklin, James R. Startin, Roger J. Tregunno, Heather Walton

Journal:

Environmental Science and Pollution Research

Year:

1996

Language:

english

File:

PDF, 601 KB

english, 1996

15

Bio-medical entity extraction using support vector machines

Koichi Takeuchi, Nigel Collier

Journal:

Artificial Intelligence in Medicine

Year:

2005

Language:

english

File:

PDF, 294 KB

english, 2005

16

Zone analysis in biology articles as a basis for information extraction

Yoko Mizuta, Anna Korhonen, Tony Mullen, Nigel Collier

Journal:

International Journal of Medical Informatics

Year:

2006

Language:

english

File:

PDF, 1.16 MB

english, 2006

17

Recent advances in natural language processing for biomedical applications

Nigel Collier, Adeline Nazarenko, Robert Baud, Patrick Ruch

Journal:

International Journal of Medical Informatics

Year:

2006

Language:

english

File:

PDF, 80 KB

english, 2006

18

A methodology to enhance spatial understanding of disease outbreak events reported in news articles

Hutchatai Chanlekha, Nigel Collier

Journal:

International Journal of Medical Informatics

Year:

2010

Language:

english

File:

PDF, 536 KB

english, 2010

19

Comparison of character-level and part of speech features for name recognition in biomedical texts

Nigel Collier, Koichi Takeuchi

Journal:

Journal of Biomedical Informatics

Year:

2004

Language:

english

File:

PDF, 494 KB

english, 2004

20

Towards role-based filtering of disease outbreak reports

Son Doan, Ai Kawazoe, Mike Conway, Nigel Collier

Journal:

Journal of Biomedical Informatics

Year:

2009

Language:

english

File:

PDF, 340 KB

english, 2009

21

PASBio: predicate-argument structures for event extraction in molecular biology

Tuangthong Wattarujeekrit, Parantu K Shah, Nigel Collier

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 407 KB

english, 2004

22

Synonym set extraction from the biomedical literature by lexical pattern discovery

John McCrae, Nigel Collier

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 351 KB

english, 2008

23

Analysis of syntactic and semantic features for fine-grained event-spatial understanding in outbreak news reports

Hutchatai Chanlekha, Nigel Collier

Journal:

Journal of Biomedical Semantics

Year:

2010

Language:

english

File:

PDF, 228 KB

english, 2010

24

What's unusual in online disease outbreak news?

Journal:

Journal of Biomedical Semantics

Year:

2010

Language:

english

File:

PDF, 1.70 MB

english, 2010

25

OMG U got flu? Analysis of shared health messages for bio-surveillance

Nigel Collier, Nguyen Truong Son, Ngoc Mai Nguyen

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 161 KB

english, 2011

26

Towards cross-lingual alerting for bursty epidemic events

Journal:

Journal of Biomedical Semantics

Year:

2011

Language:

english

File:

PDF, 259 KB

english, 2011

27

No Association between Parkinson's Disease and Low-Activity Alleles of CatecholO-Methyltransferase

Farzana Hoda, David Nicholl, Philip Bennett, Maria Arranz, Katherine J. Aitchison, Ammar Al-Chalabi, Hiroshi Kunugi, Homero Vallada, P.Nigel Leigh, K.Ray Chaudhuri, David A. Collier

Journal:

Biochemical and Biophysical Research Communications

Year:

1996

Language:

english

File:

PDF, 67 KB

english, 1996

28

MODEL OF OPIATE DEPENDENCE IN THE GUINEA-PIG ISOLATED ILEUM

HARRY O.J. COLLIER, NIGEL J. CUTHBERT, DAVID L. FRANCIS

Journal:

British Journal of Pharmacology

Year:

1981

Language:

english

File:

PDF, 1.65 MB

english, 1981

29

CLONIDINE DEPENDENCE IN THE GUINEA-PIG ISOLATED ILEUM

HARRY O.J. COLLIER, NIGEL J. CUTHBERT, DAVID L. FRANCIS

Journal:

British Journal of Pharmacology

Year:

1981

Language:

english

File:

PDF, 1.29 MB

english, 1981

30

Mechanism of quasi-morphine withdrawal behaviour induced by methylxanthines

Naeem M. Butt, Harry O.J. Collier, Nigel J. Cuthbert, David L. Francis, Sheikh A. Saeed

Journal:

European Journal of Pharmacology

Year:

1979

Language:

english

File:

PDF, 240 KB

english, 1979

31

Association between 5-HT2A gene promoter polymorphism and anorexia nervosa

David A Collier, Maria J Arranz, Tao Li, Dennis Mupita, Nigel Brown, Janet Treasure

Journal:

Year:

1997

Language:

english

File:

PDF, 47 KB

english, 1997

32

A framework for enhancing spatial and temporal granularity in report-based health surveillance systems

Hutchatai Chanlekha, Ai Kawazoe, Nigel Collier

Journal:

BMC Medical Informatics and Decision Making

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

33

Recognition of medication information from discharge summaries using ensembles of classifiers

Son Doan, Nigel Collier, Hua Xu, Pham Hoang Duy, Tu Minh Phuong

Journal:

BMC Medical Informatics and Decision Making

Year:

2012

Language:

english

File:

PDF, 279 KB

english, 2012

34

[Association for Computational Linguistics the 21st International Conference - Sydney, Australia (2006.07.17-2006.07.18)] Proceedings of the 21st International Conference on Computational Linguistics and the 44th annual meeting of the ACL - ACL '06 - Automatic classification of verbs in biomedical texts

Korhonen, Anna, Krymolowski, Yuval, Collier, Nigel

Year:

2006

Language:

english

File:

PDF, 473 KB

english, 2006

35

Change-point detection in time-series data by relative density-ratio estimation

Liu, Song, Yamada, Makoto, Collier, Nigel, Sugiyama, Masashi

Journal:

Neural Networks

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

36

ERYTHROPOIETIN, HAEMOGLOBIN, AND HYPERTENSIVE CRISES

Vallance, Patrick, Benjamin, Nigel, Collier, Joe

Journal:

Year:

1988

Language:

english

File:

PDF, 156 KB

english, 1988

37

ENALAPRIL-INDUCED COUGH

Webb, David, Benjamin, Nigel, Collier, Joe, Robinson, Brian

Journal:

Year:

1986

Language:

english

File:

PDF, 181 KB

english, 1986

38

Analgetics based on the pyrrolidine ring. 9

Bowman, Ralph E., Collier, Harry O. J., Lockhart, Ian M., Schneider, Cyril, Webb, Nigel E., Wright, Michael

Journal:

Journal of Medicinal Chemistry

Year:

1973

Language:

english

File:

PDF, 337 KB

english, 1973

39

Analgetics based on the pyrrolidine ring. 8

Bowman, Ralph E., Collier, Harry O. J., Hattersley, Peter J., Lockhart, Ian M., Peters, David J., Schneider, Cyril, Webb, Nigel E., Wright, Michael

Journal:

Journal of Medicinal Chemistry

Year:

1973

Language:

english

File:

PDF, 427 KB

english, 1973

40

[IEEE Sixth International Conference on Advanced Language Processing and Web Information Technology (ALPIT 2007) - Luoyang, Henan, China (2007.08.22-2007.08.24)] Sixth International Conference on Advanced Language Processing and Web Information Technology (ALPIT 2007) - Topic-Based Vietnamese News Document Filtering in the BioCaster Project

Hoang, Vu, Nguyen, Nguyen, Dinh, Dien, Collier, Nigel

Year:

2007

Language:

english

File:

PDF, 470 KB

english, 2007

41

[IEEE 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB) - La Jolla, CA, USA (2012.09.27-2012.09.28)] 2012 IEEE Second International Conference on Healthcare Informatics, Imaging and Systems Biology - Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses

Doan, Son, Ohno-Machado, Lucila, Collier, Nigel

Year:

2012

Language:

english

File:

PDF, 534 KB

english, 2012

42

[IEEE 2013 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Shanghai, China (2013.12.18-2013.12.21)] 2013 IEEE International Conference on Bioinformatics and Biomedicine - Using silver and semi-gold standard corpora to compare open named entity recognisers

Groza, Tudor, Oellrich, Anika, Collier, Nigel

Year:

2013

Language:

english

File:

PDF, 603 KB

english, 2013

43

Toward knowledge support for analysis and interpretation of complex traits

Nigel Collier,Anika Oellrich,Tudor Groza

Journal:

Year:

2013

Language:

english

File:

PDF, 252 KB

english, 2013

44

WRESTLING WITH BIOMEDICAL RESEARCH RESULTS: LANGUAGE RESOURCES AND LITERATURE ANALYSIS

REBHOLZ-SCHUHMANN, D., COLLIER, NIGEL, PARK, JONG C., WONG, LIMSOON

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2010

Language:

english

File:

PDF, 103 KB

english, 2010

45

[Association for Computational Linguistics proceeding of the 6th conference - Not Known (2002.08.31-..)] proceeding of the 6th conference on Natural language learning - COLING-02 - Use of support vector machines in extended named entity recognition

Takeuchi, Koichi, Collier, Nigel

Year:

2002

File:

PDF, 297 KB

2002

46

Extracellular vesicles, tissue factor, cancer and thrombosis – discussion themes of the ISEV 2014 Educational Day

Gardiner, Chris, Harrison, Paul, Belting, Mattias, Böing, Anita, Campello, Elena, Carter, Bob S., Collier, Mary E., Coumans, Frank, Ettelaie, Camille, van Es, Nick, Hochberg, Fred H., Mackman, Nigel,

Journal:

Journal of Extracellular Vesicles

Year:

2015

Language:

english

File:

PDF, 1.00 MB

english, 2015

47

Named entity recognition in Vietnamese using classifier voting

Thao, Pham Thi Xuan, Tri, Tran Quoc, Dien, Dinh, Collier, Nigel

Journal:

ACM Transactions on Asian Language Information Processing

Year:

2007

Language:

english

File:

PDF, 491 KB

english, 2007

48

[ACM Press the 22nd annual international ACM SIGIR conference - Berkeley, California, United States (1999.08.15-1999.08.19)] Proceedings of the 22nd annual international ACM SIGIR conference on Research and development in information retrieval - SIGIR '99 - A comparison of query translation methods for English-Japanese cross-language information retrieval (poster abstract)

Jones, Gareth, Sakai, Tetsuya, Collier, Nigel, Kumano, Akira, Sumita, Kazuo

Year:

1999

Language:

english

File:

PDF, 252 KB

english, 1999

49

Crowdsourcing Twitter annotations to identify first-hand experiences of prescription drug use

Alvaro, Nestor, Conway, Mike, Doan, Son, Lofi, Christoph, Overington, John, Collier, Nigel

Journal:

Journal of Biomedical Informatics

Year:

2015

Language:

english

File:

PDF, 659 KB

english, 2015

50

Special issue on bio-ontologies and phenotypes

Soldatova, Larisa N., Collier, Nigel, Oellrich, Anika, Groza, Tudor, Verspoor, Karin, Rocca-Serra, Philippe, Dumontier, Michel, Shah, Nigam H.

Journal:

Journal of Biomedical Semantics

Year:

2015

Language:

english

File:

PDF, 376 KB

english, 2015